J5_5NJT_001

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGG*CGUG*CUGU*AAG*CAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NJT|1|A|C|38
5NJT|1|A|U|39
5NJT|1|A|G|40
5NJT|1|A|G|41
*
5NJT|1|A|C|411
5NJT|1|A|G|412
5NJT|1|A|U|413
5NJT|1|A|G|414
*
5NJT|1|A|C|444
5NJT|1|A|U|445
5NJT|1|A|G|446
5NJT|1|A|U|447
*
5NJT|1|A|A|507
5NJT|1|A|A|508
5NJT|1|A|G|509
*
5NJT|1|A|C|554
5NJT|1|A|A|555
5NJT|1|A|A|556
5NJT|1|A|G|557

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12