J5_5NJT_002
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5NJT|1|A|A|107, 5NJT|1|A|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NJT_002 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1289
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|A|C|60
5NJT|1|A|A|61
5NJT|1|A|A|62
5NJT|1|A|G|63
*
5NJT|1|A|C|104
5NJT|1|A|G|105
5NJT|1|A|G|106
5NJT|1|A|A|107
5NJT|1|A|C|108
5NJT|1|A|G|109
5NJT|1|A|G|110
5NJT|1|A|G|111
*
5NJT|1|A|C|322
5NJT|1|A|A|323
5NJT|1|A|C|324
*
5NJT|1|A|G|345
5NJT|1|A|A|346
5NJT|1|A|C|347
*
5NJT|1|A|G|358
5NJT|1|A|G|359
5NJT|1|A|C|360
5NJT|1|A|A|361
5NJT|1|A|G|362
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
- Chain d
- 50S ribosomal protein L14
- Chain i
- 50S ribosomal protein L19
Coloring options: