J5_5NJT_006
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5NJT|1|U|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NJT_006 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1575
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|U|C|628
5NJT|1|U|G|629
5NJT|1|U|A|630
5NJT|1|U|G|631
5NJT|1|U|U|632
5NJT|1|U|U|633
*
5NJT|1|U|A|715
5NJT|1|U|G|716
5NJT|1|U|A|717
5NJT|1|U|C|718
*
5NJT|1|U|G|856
5NJT|1|U|U|857
5NJT|1|U|U|858
5NJT|1|U|C|859
*
5NJT|1|U|G|1236
5NJT|1|U|C|1237
*
5NJT|1|U|G|1290
5NJT|1|U|A|1291
5NJT|1|U|G|1292
5NJT|1|U|A|1293
5NJT|1|U|A|1294
5NJT|1|U|U|1295
5NJT|1|U|G|1296
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
- Chain j
- 50S ribosomal protein L20
- Chain k
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L35
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