J5_5NJT_008
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 5NJT|1|U|A|2091, 5NJT|1|U|A|2477, 5NJT|1|U|U|2614, 5NJT|1|U|U|2638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NJT|1|U|G|2086
5NJT|1|U|A|2087
5NJT|1|U|A|2088
5NJT|1|U|A|2089
5NJT|1|U|G|2090
5NJT|1|U|A|2091
5NJT|1|U|C|2092
5NJT|1|U|C|2093
*
5NJT|1|U|G|2475
5NJT|1|U|G|2476
5NJT|1|U|A|2477
5NJT|1|U|U|2478
5NJT|1|U|A|2479
5NJT|1|U|A|2480
5NJT|1|U|C|2481
5NJT|1|U|A|2482
*
5NJT|1|U|U|2529
5NJT|1|U|C|2530
5NJT|1|U|G|2531
5NJT|1|U|A|2532
5NJT|1|U|U|2533
5NJT|1|U|G|2534
5NJT|1|U|U|2535
5NJT|1|U|C|2536
*
5NJT|1|U|G|2611
5NJT|1|U|G|2612
5NJT|1|U|U|2613
5NJT|1|U|U|2614
5NJT|1|U|C|2615
5NJT|1|U|A|2616
5NJT|1|U|G|2617
*
5NJT|1|U|C|2635
5NJT|1|U|G|2636
5NJT|1|U|G|2637
5NJT|1|U|U|2638
5NJT|1|U|C|2639
5NJT|1|U|C|2640
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain X
- 50S ribosomal protein L3
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
- Chain f
- 50S ribosomal protein L16
- Chain l
- 50S ribosomal protein L22
- Chain o
- 50S ribosomal protein L27
- Chain p
- 50S ribosomal protein L32
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