J5_5NO4_002

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5NO4_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1063

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5NO4|1|A|C|36
5NO4|1|A|U|37
5NO4|1|A|G|38
5NO4|1|A|G|39
*
5NO4|1|A|C|403
5NO4|1|A|G|404
5NO4|1|A|U|405
5NO4|1|A|G|406
*
5NO4|1|A|C|436
5NO4|1|A|U|437
5NO4|1|A|U|438
5NO4|1|A|U|439
5NO4|1|A|C|440
5NO4|1|A|A|441
5NO4|1|A|G|442
*
5NO4|1|A|C|492
5NO4|1|A|A|493
5NO4|1|A|G|494
5NO4|1|A|A|495
5NO4|1|A|A|496
5NO4|1|A|G|497
5NO4|1|A|A|498
5NO4|1|A|A|499
5NO4|1|A|G|500
*
5NO4|1|A|C|545
5NO4|1|A|A|546
5NO4|1|A|A|547
5NO4|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4