J5_5NP6_003

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5NP6|1|Y|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NP6|1|Y|C|47
5NP6|1|Y|G|48
5NP6|1|Y|A|49
5NP6|1|Y|U|50
5NP6|1|Y|G|51
5NP6|1|Y|A|52
5NP6|1|Y|A|53
5NP6|1|Y|G|54
*
5NP6|1|Y|C|116
5NP6|1|Y|G|117
5NP6|1|Y|A|118
5NP6|1|Y|A|119
5NP6|1|Y|U|120
5NP6|1|Y|G|121
*
5NP6|1|Y|C|130
5NP6|1|Y|A|131
*
5NP6|1|Y|U|148
5NP6|1|Y|A|149
5NP6|1|Y|U|150
*
5NP6|1|Y|A|176
5NP6|1|Y|G|177
5NP6|1|Y|G|178

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34