J5_5NP6_007
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUCG*(PSU)GGGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 5NP6|1|Y|A|2062, 5NP6|1|Y|A|2448, 5NP6|1|Y|H2U|2449, 5NP6|1|Y|U|2506, 5NP6|1|Y|U|2585, 5NP6|1|Y|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NP6|1|Y|G|2057
5NP6|1|Y|A|2058
5NP6|1|Y|A|2059
5NP6|1|Y|A|2060
5NP6|1|Y|G|2061
5NP6|1|Y|A|2062
5NP6|1|Y|C|2063
5NP6|1|Y|C|2064
*
5NP6|1|Y|G|2446
5NP6|1|Y|G|2447
5NP6|1|Y|A|2448
5NP6|1|Y|H2U|2449
5NP6|1|Y|A|2450
5NP6|1|Y|A|2451
5NP6|1|Y|C|2452
5NP6|1|Y|A|2453
*
5NP6|1|Y|U|2500
5NP6|1|Y|C|2501
5NP6|1|Y|G|2502
5NP6|1|Y|2MA|2503
5NP6|1|Y|PSU|2504
5NP6|1|Y|G|2505
5NP6|1|Y|U|2506
5NP6|1|Y|C|2507
5NP6|1|Y|G|2508
*
5NP6|1|Y|PSU|2580
5NP6|1|Y|G|2581
5NP6|1|Y|G|2582
5NP6|1|Y|G|2583
5NP6|1|Y|U|2584
5NP6|1|Y|U|2585
5NP6|1|Y|U|2586
5NP6|1|Y|A|2587
5NP6|1|Y|G|2588
*
5NP6|1|Y|C|2606
5NP6|1|Y|G|2607
5NP6|1|Y|G|2608
5NP6|1|Y|U|2609
5NP6|1|Y|C|2610
5NP6|1|Y|C|2611
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain C
- DNA topoisomerase small subunit
- Chain a
- 50S ribosomal protein L2
- Chain b
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L4
- Chain j
- 50S ribosomal protein L15
- Chain k
- 50S ribosomal protein L16
- Chain q
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L32
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