J5_5NP6_009

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGG*CGUGUA*UACUUUC*GAAG*CAAG

Length

25 nucleotides

Bulged bases

5NP6|1|D|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NP6|1|D|C|36
5NP6|1|D|U|37
5NP6|1|D|G|38
5NP6|1|D|G|39
*
5NP6|1|D|C|403
5NP6|1|D|G|404
5NP6|1|D|U|405
5NP6|1|D|G|406
5NP6|1|D|U|407
5NP6|1|D|A|408
*
5NP6|1|D|U|434
5NP6|1|D|A|435
5NP6|1|D|C|436
5NP6|1|D|U|437
5NP6|1|D|U|438
5NP6|1|D|U|439
5NP6|1|D|C|440
*
5NP6|1|D|G|497
5NP6|1|D|A|498
5NP6|1|D|A|499
5NP6|1|D|G|500
*
5NP6|1|D|C|545
5NP6|1|D|A|546
5NP6|1|D|A|547
5NP6|1|D|G|548

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain O

30S ribosomal protein S12