J5_5NRG_001

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAAUGAAG*CGAAUG*CA*UAUCGAUAU*AUAUCAGAAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|C|47
5NRG|1|X|A|48
5NRG|1|X|A|49
5NRG|1|X|U|50
5NRG|1|X|G|51
5NRG|1|X|A|52
5NRG|1|X|A|53
5NRG|1|X|G|54
*
5NRG|1|X|C|115
5NRG|1|X|G|116
5NRG|1|X|A|117
5NRG|1|X|A|118
5NRG|1|X|U|119
5NRG|1|X|G|120
*
5NRG|1|X|C|129
5NRG|1|X|A|130
*
5NRG|1|X|U|149
5NRG|1|X|A|150
5NRG|1|X|U|151
5NRG|1|X|C|152
5NRG|1|X|G|153
5NRG|1|X|A|154
5NRG|1|X|U|155
5NRG|1|X|A|156
5NRG|1|X|U|157
*
5NRG|1|X|A|171
5NRG|1|X|U|172
5NRG|1|X|A|173
5NRG|1|X|U|174
5NRG|1|X|C|175
5NRG|1|X|A|176
5NRG|1|X|G|177
5NRG|1|X|A|178
5NRG|1|X|A|179
5NRG|1|X|G|180

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23