J5_5O5J_003

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

5O5J|1|A|A|105, 5O5J|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5O5J_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0923

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5O5J|1|A|C|62
5O5J|1|A|A|63
5O5J|1|A|A|64
5O5J|1|A|G|65
*
5O5J|1|A|C|102
5O5J|1|A|G|103
5O5J|1|A|A|104
5O5J|1|A|A|105
5O5J|1|A|C|106
5O5J|1|A|G|107
5O5J|1|A|G|108
5O5J|1|A|G|109
*
5O5J|1|A|C|314
5O5J|1|A|A|315
5O5J|1|A|C|316
*
5O5J|1|A|G|337
5O5J|1|A|A|338
5O5J|1|A|C|339
*
5O5J|1|A|G|350
5O5J|1|A|G|351
5O5J|1|A|C|352
5O5J|1|A|A|353
5O5J|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20