J5_5O60_005

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O60|1|A|C|694
5O60|1|A|G|695
5O60|1|A|A|696
5O60|1|A|G|697
*
5O60|1|A|C|718
5O60|1|A|G|719
5O60|1|A|C|720
5O60|1|A|A|721
5O60|1|A|G|722
*
5O60|1|A|C|729
5O60|1|A|G|730
5O60|1|A|A|731
5O60|1|A|G|732
*
5O60|1|A|C|744
5O60|1|A|G|745
5O60|1|A|U|746
5O60|1|A|A|747
5O60|1|A|U|748
5O60|1|A|C|749
*
5O60|1|A|G|766
5O60|1|A|U|767
5O60|1|A|G|768
5O60|1|A|U|769
5O60|1|A|A|770
5O60|1|A|G|771

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35