J5_5O60_007
3D structure
- PDB id
- 5O60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCU
- Length
- 35 nucleotides
- Bulged bases
- 5O60|1|A|A|2286, 5O60|1|A|A|2672, 5O60|1|A|G|2729, 5O60|1|A|U|2833, 5O60|1|A|C|2834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5O60|1|A|A|2281
5O60|1|A|A|2282
5O60|1|A|A|2283
5O60|1|A|A|2284
5O60|1|A|G|2285
5O60|1|A|A|2286
5O60|1|A|C|2287
5O60|1|A|C|2288
*
5O60|1|A|G|2670
5O60|1|A|G|2671
5O60|1|A|A|2672
5O60|1|A|U|2673
5O60|1|A|A|2674
5O60|1|A|A|2675
5O60|1|A|C|2676
5O60|1|A|A|2677
*
5O60|1|A|U|2724
5O60|1|A|C|2725
5O60|1|A|G|2726
5O60|1|A|A|2727
5O60|1|A|U|2728
5O60|1|A|G|2729
5O60|1|A|U|2730
*
5O60|1|A|G|2807
5O60|1|A|U|2808
5O60|1|A|U|2809
5O60|1|A|U|2810
5O60|1|A|A|2811
5O60|1|A|G|2812
*
5O60|1|A|C|2830
5O60|1|A|G|2831
5O60|1|A|G|2832
5O60|1|A|U|2833
5O60|1|A|C|2834
5O60|1|A|U|2835
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- tRNA CCA-end acetylated (Phe)
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: