3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
CGAGUC*GGAC*GUUC*GC*GAGAAUG
Length
23 nucleotides
Bulged bases
5O61|1|A|U|1370
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5O61_004 not in the Motif Atlas
Homologous match to J5_4WF9_004
Geometric discrepancy: 0.107
The information below is about J5_4WF9_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

5O61|1|A|C|676
5O61|1|A|G|677
5O61|1|A|A|678
5O61|1|A|G|679
5O61|1|A|U|680
5O61|1|A|C|681
*
5O61|1|A|G|783
5O61|1|A|G|784
5O61|1|A|A|785
5O61|1|A|C|786
*
5O61|1|A|G|924
5O61|1|A|U|925
5O61|1|A|U|926
5O61|1|A|C|927
*
5O61|1|A|G|1310
5O61|1|A|C|1311
*
5O61|1|A|G|1365
5O61|1|A|A|1366
5O61|1|A|G|1367
5O61|1|A|A|1368
5O61|1|A|A|1369
5O61|1|A|U|1370
5O61|1|A|G|1371

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain M
50S ribosomal protein L15
Chain R
50S ribosomal protein L20
Chain S
50S ribosomal protein L21
Chain e
50S ribosomal protein L35

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1809 s