J5_5O61_007

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCU

Length

35 nucleotides

Bulged bases

5O61|1|A|A|2286, 5O61|1|A|A|2672, 5O61|1|A|G|2729, 5O61|1|A|U|2833, 5O61|1|A|C|2834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O61|1|A|A|2281
5O61|1|A|A|2282
5O61|1|A|A|2283
5O61|1|A|A|2284
5O61|1|A|G|2285
5O61|1|A|A|2286
5O61|1|A|C|2287
5O61|1|A|C|2288
*
5O61|1|A|G|2670
5O61|1|A|G|2671
5O61|1|A|A|2672
5O61|1|A|U|2673
5O61|1|A|A|2674
5O61|1|A|A|2675
5O61|1|A|C|2676
5O61|1|A|A|2677
*
5O61|1|A|U|2724
5O61|1|A|C|2725
5O61|1|A|G|2726
5O61|1|A|A|2727
5O61|1|A|U|2728
5O61|1|A|G|2729
5O61|1|A|U|2730
*
5O61|1|A|G|2807
5O61|1|A|U|2808
5O61|1|A|U|2809
5O61|1|A|U|2810
5O61|1|A|A|2811
5O61|1|A|G|2812
*
5O61|1|A|C|2830
5O61|1|A|G|2831
5O61|1|A|G|2832
5O61|1|A|U|2833
5O61|1|A|C|2834
5O61|1|A|U|2835

Current chains

Chain A

23S rRNA

Nearby chains

Chain BW

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32