J5_5O61_010

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5O61_010 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1249

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5O61|1|BA|C|40
5O61|1|BA|U|41
5O61|1|BA|G|42
5O61|1|BA|G|43
*
5O61|1|BA|C|403
5O61|1|BA|G|404
5O61|1|BA|U|405
5O61|1|BA|G|406
*
5O61|1|BA|C|436
5O61|1|BA|U|437
5O61|1|BA|U|438
5O61|1|BA|U|439
5O61|1|BA|C|440
5O61|1|BA|A|441
5O61|1|BA|G|442
*
5O61|1|BA|C|472
5O61|1|BA|A|473
5O61|1|BA|G|474
5O61|1|BA|A|475
5O61|1|BA|A|476
5O61|1|BA|G|477
5O61|1|BA|A|478
5O61|1|BA|A|479
5O61|1|BA|G|480
*
5O61|1|BA|C|525
5O61|1|BA|G|526
5O61|1|BA|A|527
5O61|1|BA|G|528

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12