J5_5OOM_002
3D structure
- PDB id
- 5OOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CUAGAAAUAAC*GACCC*GUUG*CCAAU*AAGAACUAAUG
- Length
- 36 nucleotides
- Bulged bases
- 5OOM|1|A|A|1869, 5OOM|1|A|G|2292, 5OOM|1|A|U|2299
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OOM|1|A|C|1865
5OOM|1|A|U|1866
5OOM|1|A|A|1867
5OOM|1|A|G|1868
5OOM|1|A|A|1869
5OOM|1|A|A|1870
5OOM|1|A|A|1871
5OOM|1|A|U|1872
5OOM|1|A|A|1873
5OOM|1|A|A|1874
5OOM|1|A|C|1875
*
5OOM|1|A|G|1899
5OOM|1|A|A|1900
5OOM|1|A|C|1901
5OOM|1|A|C|1902
5OOM|1|A|C|1903
*
5OOM|1|A|G|2019
5OOM|1|A|U|2020
5OOM|1|A|U|2021
5OOM|1|A|G|2022
*
5OOM|1|A|C|2271
5OOM|1|A|C|2272
5OOM|1|A|A|2273
5OOM|1|A|A|2274
5OOM|1|A|U|2275
*
5OOM|1|A|A|2290
5OOM|1|A|A|2291
5OOM|1|A|G|2292
5OOM|1|A|A|2293
5OOM|1|A|A|2294
5OOM|1|A|C|2295
5OOM|1|A|U|2296
5OOM|1|A|A|2297
5OOM|1|A|A|2298
5OOM|1|A|U|2299
5OOM|1|A|G|2300
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain b
- 39S ribosomal protein L43, mitochondrial
- Chain c
- 39S ribosomal protein L44, mitochondrial
- Chain g
- 39S ribosomal protein L49, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: