J5_5OPT_003
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUG*CGCAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5OPT|1|E|A|90, 5OPT|1|E|C|471
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5OPT_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1544
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5OPT|1|E|C|54
5OPT|1|E|A|55
5OPT|1|E|U|56
5OPT|1|E|G|57
*
5OPT|1|E|C|87
5OPT|1|E|G|88
5OPT|1|E|C|89
5OPT|1|E|A|90
5OPT|1|E|U|91
5OPT|1|E|G|92
5OPT|1|E|G|93
5OPT|1|E|C|94
*
5OPT|1|E|G|433
5OPT|1|E|A|434
5OPT|1|E|G|435
*
5OPT|1|E|C|456
5OPT|1|E|A|457
5OPT|1|E|C|458
*
5OPT|1|E|G|469
5OPT|1|E|G|470
5OPT|1|E|C|471
5OPT|1|E|A|472
5OPT|1|E|G|473
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S4
- Chain P
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
- Chain Z
- 40S ribosomal protein S8
- Chain b
- 40S ribosomal protein S9, putative
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