J5_5OT7_003

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5OT7|1|4|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5OT7_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1327

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5OT7|1|4|C|47
5OT7|1|4|G|48
5OT7|1|4|A|49
5OT7|1|4|U|50
5OT7|1|4|G|51
5OT7|1|4|A|52
5OT7|1|4|A|53
5OT7|1|4|G|54
*
5OT7|1|4|C|116
5OT7|1|4|G|117
5OT7|1|4|A|118
5OT7|1|4|A|119
5OT7|1|4|U|120
5OT7|1|4|G|121
*
5OT7|1|4|C|130
5OT7|1|4|G|131
*
5OT7|1|4|C|148
5OT7|1|4|A|149
5OT7|1|4|C|150
*
5OT7|1|4|G|176
5OT7|1|4|G|177
5OT7|1|4|G|178

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L34

Chain y

50S ribosomal protein L23