J5_5T2A_003
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5T2A|1|A|U|1528
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T2A_003 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1006
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|A|G|690
5T2A|1|A|G|691
5T2A|1|A|A|692
5T2A|1|A|G|693
5T2A|1|A|U|694
5T2A|1|A|C|695
*
5T2A|1|A|G|850
5T2A|1|A|G|851
5T2A|1|A|A|852
5T2A|1|A|C|853
*
5T2A|1|A|G|992
5T2A|1|A|U|993
5T2A|1|A|U|994
5T2A|1|A|C|995
*
5T2A|1|A|G|1467
5T2A|1|A|C|1468
*
5T2A|1|A|G|1523
5T2A|1|A|C|1524
5T2A|1|A|A|1525
5T2A|1|A|G|1526
5T2A|1|A|A|1527
5T2A|1|A|U|1528
5T2A|1|A|C|1529
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L
- eL13
- Chain O
- eL15
- Chain Z
- uL15
- Chain a
- eL28
- Chain g
- eL32
- Chain p
- uL4
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