J5_5T2A_004
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACCC*GGGAUAACUG*CUUCGAUGUC*GGUUUAG*UGGUUU
- Length
- 42 nucleotides
- Bulged bases
- 5T2A|1|B|A|587, 5T2A|1|B|A|1191, 5T2A|1|B|G|1248, 5T2A|1|B|U|1352, 5T2A|1|B|U|1353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|B|A|582
5T2A|1|B|G|583
5T2A|1|B|A|584
5T2A|1|B|A|585
5T2A|1|B|G|586
5T2A|1|B|A|587
5T2A|1|B|C|588
5T2A|1|B|C|589
5T2A|1|B|C|590
*
5T2A|1|B|G|1188
5T2A|1|B|G|1189
5T2A|1|B|G|1190
5T2A|1|B|A|1191
5T2A|1|B|U|1192
5T2A|1|B|A|1193
5T2A|1|B|A|1194
5T2A|1|B|C|1195
5T2A|1|B|U|1196
5T2A|1|B|G|1197
*
5T2A|1|B|C|1241
5T2A|1|B|U|1242
5T2A|1|B|U|1243
5T2A|1|B|C|1244
5T2A|1|B|G|1245
5T2A|1|B|A|1246
5T2A|1|B|U|1247
5T2A|1|B|G|1248
5T2A|1|B|U|1249
5T2A|1|B|C|1250
*
5T2A|1|B|G|1325
5T2A|1|B|G|1326
5T2A|1|B|U|1327
5T2A|1|B|U|1328
5T2A|1|B|U|1329
5T2A|1|B|A|1330
5T2A|1|B|G|1331
*
5T2A|1|B|U|1349
5T2A|1|B|G|1350
5T2A|1|B|G|1351
5T2A|1|B|U|1352
5T2A|1|B|U|1353
5T2A|1|B|U|1354
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL16
- Chain P
- uL22
- Chain Z
- uL15
- Chain b
- eL29
- Chain c
- uL2
- Chain d
- uL3
- Chain p
- uL4
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