J5_5T2A_006
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGG*CGUUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 5T2A|1|C|U|129
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T2A_006 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.205
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|A|A|18
5T2A|1|A|G|19
5T2A|1|A|G|20
*
5T2A|1|C|C|126
5T2A|1|C|G|127
5T2A|1|C|U|128
5T2A|1|C|U|129
5T2A|1|C|G|130
5T2A|1|C|A|131
5T2A|1|C|A|132
5T2A|1|C|G|133
*
5T2A|1|C|U|192
5T2A|1|C|G|193
5T2A|1|C|A|194
5T2A|1|C|A|195
5T2A|1|C|C|196
5T2A|1|C|G|197
*
5T2A|1|C|C|205
5T2A|1|C|G|206
*
5T2A|1|C|C|239
5T2A|1|C|A|240
5T2A|1|C|U|241
Current chains
- Chain A
- LSU-alpha
- Chain C
- 5.8S rRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- eL15
- Chain V
- uL23
- Chain i
- uL29
- Chain l
- eL37
- Chain o
- eL39
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