J5_5T2C_001
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 5T2C|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T2C_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1208
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T2C|1|A|G|19
5T2C|1|A|U|20
5T2C|1|A|G|21
*
5T2C|1|C|C|35
5T2C|1|C|G|36
5T2C|1|C|A|37
5T2C|1|C|U|38
5T2C|1|C|G|39
5T2C|1|C|A|40
5T2C|1|C|A|41
5T2C|1|C|G|42
*
5T2C|1|C|C|101
5T2C|1|C|G|102
5T2C|1|C|A|103
5T2C|1|C|A|104
5T2C|1|C|C|105
5T2C|1|C|G|106
*
5T2C|1|C|C|113
5T2C|1|C|G|114
*
5T2C|1|C|U|136
5T2C|1|C|A|137
5T2C|1|C|C|138
Current chains
- Chain A
- 28S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L23a
- Chain b
- 60S ribosomal protein L35
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
- Chain t
- 60S ribosomal protein L15
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