J5_5T2C_003
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCGCCGCGCUCUC*GCCGG*CCACGCGCGCGUC*GACGGCGGAGCGAGCGCACGGGGU
- Length
- 74 nucleotides
- Bulged bases
- 5T2C|1|A|G|957, 5T2C|1|A|G|961, 5T2C|1|A|C|962, 5T2C|1|A|A|966, 5T2C|1|A|C|968, 5T2C|1|A|C|1237, 5T2C|1|A|C|1272, 5T2C|1|A|G|1273, 5T2C|1|A|C|1280, 5T2C|1|A|G|1281, 5T2C|1|A|G|1284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|A|A|711
5T2C|1|A|C|712
5T2C|1|A|C|713
*
5T2C|1|A|G|955
5T2C|1|A|A|956
5T2C|1|A|G|957
5T2C|1|A|G|958
5T2C|1|A|G|959
5T2C|1|A|A|960
5T2C|1|A|G|961
5T2C|1|A|C|962
5T2C|1|A|G|963
5T2C|1|A|A|964
5T2C|1|A|G|965
5T2C|1|A|A|966
5T2C|1|A|C|967
5T2C|1|A|C|968
5T2C|1|A|C|969
5T2C|1|A|G|970
5T2C|1|A|U|971
5T2C|1|A|C|972
5T2C|1|A|G|973
5T2C|1|A|C|974
5T2C|1|A|C|975
5T2C|1|A|G|976
5T2C|1|A|C|977
5T2C|1|A|G|978
5T2C|1|A|C|979
5T2C|1|A|U|980
5T2C|1|A|C|981
5T2C|1|A|U|982
5T2C|1|A|C|983
*
5T2C|1|A|G|1070
5T2C|1|A|C|1071
5T2C|1|A|C|1072
5T2C|1|A|G|1073
5T2C|1|A|G|1074
*
5T2C|1|A|C|1236
5T2C|1|A|C|1237
5T2C|1|A|A|1238
5T2C|1|A|C|1239
5T2C|1|A|G|1240
5T2C|1|A|C|1241
5T2C|1|A|G|1242
5T2C|1|A|C|1243
5T2C|1|A|G|1244
5T2C|1|A|C|1245
5T2C|1|A|G|1246
5T2C|1|A|U|1247
5T2C|1|A|C|1248
*
5T2C|1|A|G|1262
5T2C|1|A|A|1263
5T2C|1|A|C|1264
5T2C|1|A|G|1265
5T2C|1|A|G|1266
5T2C|1|A|C|1267
5T2C|1|A|G|1268
5T2C|1|A|G|1269
5T2C|1|A|A|1270
5T2C|1|A|G|1271
5T2C|1|A|C|1272
5T2C|1|A|G|1273
5T2C|1|A|A|1274
5T2C|1|A|G|1275
5T2C|1|A|C|1276
5T2C|1|A|G|1277
5T2C|1|A|C|1278
5T2C|1|A|A|1279
5T2C|1|A|C|1280
5T2C|1|A|G|1281
5T2C|1|A|G|1282
5T2C|1|A|G|1283
5T2C|1|A|G|1284
5T2C|1|A|U|1285
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain H
- 60S ribosomal protein L6
- Chain Y
- 60S ribosomal protein L32
- Chain Z
- 60S ribosomal protein L35a
- Chain k
- 60S ribosomal protein L28
- Chain m
- 60S ribosomal protein L7
Coloring options: