J5_5T2C_004
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 5T2C|1|A|C|2289, 5T2C|1|A|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T2C_004 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1825
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5T2C|1|A|G|1335
5T2C|1|A|G|1336
5T2C|1|A|A|1337
5T2C|1|A|G|1338
5T2C|1|A|U|1339
5T2C|1|A|C|1340
*
5T2C|1|A|G|1516
5T2C|1|A|G|1517
5T2C|1|A|A|1518
5T2C|1|A|C|1519
*
5T2C|1|A|G|1658
5T2C|1|A|U|1659
5T2C|1|A|U|1660
5T2C|1|A|C|1661
*
5T2C|1|A|G|2288
5T2C|1|A|C|2289
5T2C|1|A|C|2290
*
5T2C|1|A|G|2345
5T2C|1|A|C|2346
5T2C|1|A|A|2347
5T2C|1|A|G|2348
5T2C|1|A|A|2349
5T2C|1|A|U|2350
5T2C|1|A|C|2351
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4
- Chain U
- 60S ribosomal protein L27a
- Chain Y
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L28
- Chain r
- 60S ribosomal protein L13
- Chain t
- 60S ribosomal protein L15
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