J5_5T2C_005
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5T2C|1|A|G|3620, 5T2C|1|A|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T2C_005 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1478
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|A|G|2855
5T2C|1|A|C|2856
5T2C|1|A|A|2857
5T2C|1|A|A|2858
5T2C|1|A|G|2859
5T2C|1|A|C|2860
5T2C|1|A|C|2861
5T2C|1|A|G|2862
5T2C|1|A|G|2863
*
5T2C|1|A|U|2887
5T2C|1|A|G|2888
*
5T2C|1|A|U|3613
5T2C|1|A|G|3614
*
5T2C|1|A|C|3618
5T2C|1|A|G|3619
5T2C|1|A|G|3620
5T2C|1|A|A|3621
5T2C|1|A|C|3622
5T2C|1|A|C|3623
5T2C|1|A|A|3624
5T2C|1|A|G|3625
5T2C|1|A|G|3626
*
5T2C|1|A|C|3835
5T2C|1|A|A|3836
5T2C|1|A|C|3837
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- 60S ribosomal protein L3
- Chain L
- 60S ribosomal protein L19
- Chain P
- 60S ribosomal protein L23
- Chain Q
- 60S ribosomal protein L24
Coloring options: