Loop J5_5T2C

3D structure

PDB id: 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
Description: CryoEM structure of the human ribosome at 3.6 Angstrom resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 5T2C|1|A|A|3908, 5T2C|1|A|A|4394, 5T2C|1|A|G|4451, 5T2C|1|A|U|4452, 5T2C|1|A|U|4531, 5T2C|1|A|U|4555, 5T2C|1|A|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5T2C|1|A|A|3902
5T2C|1|A|A|3903
5T2C|1|A|G|3904
5T2C|1|A|A|3905
5T2C|1|A|A|3906
5T2C|1|A|G|3907
5T2C|1|A|A|3908
5T2C|1|A|C|3909
5T2C|1|A|C|3910
*
5T2C|1|A|G|4392
5T2C|1|A|G|4393
5T2C|1|A|A|4394
5T2C|1|A|U|4395
5T2C|1|A|A|4396
5T2C|1|A|A|4397
5T2C|1|A|C|4398
5T2C|1|A|U|4399
5T2C|1|A|G|4400
*
5T2C|1|A|C|4444
5T2C|1|A|U|4445
5T2C|1|A|U|4446
5T2C|1|A|C|4447
5T2C|1|A|G|4448
5T2C|1|A|A|4449
5T2C|1|A|U|4450
5T2C|1|A|G|4451
5T2C|1|A|U|4452
5T2C|1|A|C|4453
*
5T2C|1|A|G|4528
5T2C|1|A|G|4529
5T2C|1|A|U|4530
5T2C|1|A|U|4531
5T2C|1|A|U|4532
5T2C|1|A|A|4533
5T2C|1|A|G|4534
*
5T2C|1|A|U|4552
5T2C|1|A|A|4553
5T2C|1|A|G|4554
5T2C|1|A|U|4555
5T2C|1|A|U|4556
5T2C|1|A|U|4557
5T2C|1|A|U|4558

Current chains

Chain A: 28S rRNA

Nearby chains

Chain D: 60S ribosomal protein L8
Chain E: 60S ribosomal protein L3
Chain F: 60S ribosomal protein L4
Chain V: 60S ribosomal protein L29

J5_5T2C_006