J5_5T2C_008

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAUU*AAUAG

Length

37 nucleotides

Bulged bases

5T2C|1|AA|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|C|30
5T2C|1|AA|U|31
5T2C|1|AA|U|32
5T2C|1|AA|G|33
5T2C|1|AA|U|34
*
5T2C|1|AA|A|521
5T2C|1|AA|A|522
5T2C|1|AA|A|523
5T2C|1|AA|U|524
5T2C|1|AA|A|525
5T2C|1|AA|A|526
5T2C|1|AA|C|527
*
5T2C|1|AA|G|558
5T2C|1|AA|G|559
5T2C|1|AA|A|560
5T2C|1|AA|A|561
5T2C|1|AA|U|562
5T2C|1|AA|G|563
5T2C|1|AA|A|564
5T2C|1|AA|G|565
*
5T2C|1|AA|C|585
5T2C|1|AA|G|586
5T2C|1|AA|A|587
5T2C|1|AA|G|588
5T2C|1|AA|G|589
5T2C|1|AA|A|590
5T2C|1|AA|U|591
5T2C|1|AA|C|592
5T2C|1|AA|C|593
5T2C|1|AA|A|594
5T2C|1|AA|U|595
5T2C|1|AA|U|596
*
5T2C|1|AA|A|640
5T2C|1|AA|A|641
5T2C|1|AA|U|642
5T2C|1|AA|A|643
5T2C|1|AA|G|644

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S23

Chain AL

40S ribosomal protein S9

Chain AT

40S ribosomal protein S30