J5_5T2C_009

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUGGAUAAC*GCUAAUACAUGCCGACGGGC*GUGCAUU*ACCUCGGGCCGAUC*GACGACC

Length

77 nucleotides

Bulged bases

5T2C|1|AA|U|128, 5T2C|1|AA|C|129, 5T2C|1|AA|G|130, 5T2C|1|AA|C|131, 5T2C|1|AA|U|132, 5T2C|1|AA|C|133, 5T2C|1|AA|C|134, 5T2C|1|AA|U|135, 5T2C|1|AA|C|136, 5T2C|1|AA|U|137, 5T2C|1|AA|C|138, 5T2C|1|AA|C|139, 5T2C|1|AA|C|142, 5T2C|1|AA|U|143, 5T2C|1|AA|U|144, 5T2C|1|AA|U|172, 5T2C|1|AA|G|183, 5T2C|1|AA|U|305, 5T2C|1|AA|C|306, 5T2C|1|AA|G|307, 5T2C|1|AA|G|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|123
5T2C|1|AA|U|124
5T2C|1|AA|C|125
5T2C|1|AA|G|126
5T2C|1|AA|C|127
5T2C|1|AA|U|128
5T2C|1|AA|C|129
5T2C|1|AA|G|130
5T2C|1|AA|C|131
5T2C|1|AA|U|132
5T2C|1|AA|C|133
5T2C|1|AA|C|134
5T2C|1|AA|U|135
5T2C|1|AA|C|136
5T2C|1|AA|U|137
5T2C|1|AA|C|138
5T2C|1|AA|C|139
5T2C|1|AA|C|140
5T2C|1|AA|A|141
5T2C|1|AA|C|142
5T2C|1|AA|U|143
5T2C|1|AA|U|144
5T2C|1|AA|G|145
5T2C|1|AA|G|146
5T2C|1|AA|A|147
5T2C|1|AA|U|148
5T2C|1|AA|A|149
5T2C|1|AA|A|150
5T2C|1|AA|C|151
*
5T2C|1|AA|G|167
5T2C|1|AA|C|168
5T2C|1|AA|U|169
5T2C|1|AA|A|170
5T2C|1|AA|A|171
5T2C|1|AA|U|172
5T2C|1|AA|A|173
5T2C|1|AA|C|174
5T2C|1|AA|A|175
5T2C|1|AA|U|176
5T2C|1|AA|G|177
5T2C|1|AA|C|178
5T2C|1|AA|C|179
5T2C|1|AA|G|180
5T2C|1|AA|A|181
5T2C|1|AA|C|182
5T2C|1|AA|G|183
5T2C|1|AA|G|184
5T2C|1|AA|G|185
5T2C|1|AA|C|186
*
5T2C|1|AA|G|213
5T2C|1|AA|U|214
5T2C|1|AA|G|215
5T2C|1|AA|C|216
5T2C|1|AA|A|217
5T2C|1|AA|U|218
5T2C|1|AA|U|219
*
5T2C|1|AA|A|302
5T2C|1|AA|C|303
5T2C|1|AA|C|304
5T2C|1|AA|U|305
5T2C|1|AA|C|306
5T2C|1|AA|G|307
5T2C|1|AA|G|308
5T2C|1|AA|G|309
5T2C|1|AA|C|310
5T2C|1|AA|C|311
5T2C|1|AA|G|312
5T2C|1|AA|A|313
5T2C|1|AA|U|314
5T2C|1|AA|C|315
*
5T2C|1|AA|G|335
5T2C|1|AA|A|336
5T2C|1|AA|C|337
5T2C|1|AA|G|338
5T2C|1|AA|A|339
5T2C|1|AA|C|340
5T2C|1|AA|C|341

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S6

Chain AQ

40S ribosomal protein S24

Chain Ar

40S ribosomal protein S4, X isoform

Chain Au

40S ribosomal protein S8