J5_5T6R_003
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 5T6R|1|A|U|719, 5T6R|1|A|A|784, 5T6R|1|A|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T6R_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0881
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5T6R|1|A|C|675
5T6R|1|A|G|676
5T6R|1|A|A|677
5T6R|1|A|G|678
*
5T6R|1|A|C|702
5T6R|1|A|G|703
5T6R|1|A|U|704
5T6R|1|A|A|705
5T6R|1|A|A|706
*
5T6R|1|A|U|713
5T6R|1|A|G|714
5T6R|1|A|A|715
5T6R|1|A|A|716
5T6R|1|A|C|717
5T6R|1|A|G|718
5T6R|1|A|U|719
5T6R|1|A|A|720
5T6R|1|A|G|721
*
5T6R|1|A|C|749
5T6R|1|A|G|750
5T6R|1|A|A|751
*
5T6R|1|A|U|782
5T6R|1|A|A|783
5T6R|1|A|A|784
5T6R|1|A|G|785
5T6R|1|A|A|786
5T6R|1|A|G|787
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain d
- 60S ribosomal protein L18-A
- Chain n
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L29
- Chain v
- 60S ribosomal protein L36-A
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