J5_5T7V_002
3D structure
- PDB id
- 5T7V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5T7V|1|A|A|61, 5T7V|1|A|A|108, 5T7V|1|A|C|360, 5T7V|1|A|A|361
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T7V_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1926
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5T7V|1|A|C|59
5T7V|1|A|A|60
5T7V|1|A|A|61
5T7V|1|A|G|62
*
5T7V|1|A|C|105
5T7V|1|A|G|106
5T7V|1|A|G|107
5T7V|1|A|A|108
5T7V|1|A|C|109
5T7V|1|A|G|110
5T7V|1|A|G|111
5T7V|1|A|G|112
*
5T7V|1|A|C|322
5T7V|1|A|A|323
5T7V|1|A|C|324
*
5T7V|1|A|G|345
5T7V|1|A|A|346
5T7V|1|A|C|347
*
5T7V|1|A|G|358
5T7V|1|A|G|359
5T7V|1|A|C|360
5T7V|1|A|A|361
5T7V|1|A|G|362
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain LN
- 50S ribosomal protein L14
- Chain S7
- 30S ribosomal protein S16
- Chain SA
- 30S ribosomal protein S20
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