J5_5T7V_010
3D structure
- PDB id
- 5T7V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5T7V|1|B|G|1785, 5T7V|1|B|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T7V_010 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1253
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T7V|1|B|G|1718
5T7V|1|B|C|1719
5T7V|1|B|A|1720
5T7V|1|B|A|1721
5T7V|1|B|A|1722
5T7V|1|B|A|1723
5T7V|1|B|U|1724
5T7V|1|B|G|1725
5T7V|1|B|A|1726
*
5T7V|1|B|U|1750
5T7V|1|B|G|1751
*
5T7V|1|B|C|1778
5T7V|1|B|C|1779
*
5T7V|1|B|G|1783
5T7V|1|B|U|1784
5T7V|1|B|G|1785
5T7V|1|B|A|1786
5T7V|1|B|A|1787
5T7V|1|B|U|1788
5T7V|1|B|A|1789
5T7V|1|B|G|1790
5T7V|1|B|G|1791
*
5T7V|1|B|C|2015
5T7V|1|B|A|2016
5T7V|1|B|C|2017
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L1
- 50S ribosomal protein L19
- Chain LC
- 50S ribosomal protein L3
- Chain LN
- 50S ribosomal protein L14
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