J5_5TCU_003

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAACCA*UGGGGUUGUAG*CUGAGUACG*CGGAAUCUGG*CUAAG

Length

43 nucleotides

Bulged bases

5TCU|1|B|U|301, 5TCU|1|B|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|B|C|271
5TCU|1|B|C|272
5TCU|1|B|A|273
5TCU|1|B|A|274
5TCU|1|B|A|275
5TCU|1|B|C|276
5TCU|1|B|C|277
5TCU|1|B|A|278
*
5TCU|1|B|U|293
5TCU|1|B|G|294
5TCU|1|B|G|295
5TCU|1|B|G|296
5TCU|1|B|G|297
5TCU|1|B|U|298
5TCU|1|B|U|299
5TCU|1|B|G|300
5TCU|1|B|U|301
5TCU|1|B|A|302
5TCU|1|B|G|303
*
5TCU|1|B|C|414
5TCU|1|B|U|415
5TCU|1|B|G|416
5TCU|1|B|A|417
5TCU|1|B|G|418
5TCU|1|B|U|419
5TCU|1|B|A|420
5TCU|1|B|C|421
5TCU|1|B|G|422
*
5TCU|1|B|C|444
5TCU|1|B|G|445
5TCU|1|B|G|446
5TCU|1|B|A|447
5TCU|1|B|A|448
5TCU|1|B|U|449
5TCU|1|B|C|450
5TCU|1|B|U|451
5TCU|1|B|G|452
5TCU|1|B|G|453
*
5TCU|1|B|C|466
5TCU|1|B|U|467
5TCU|1|B|A|468
5TCU|1|B|A|469
5TCU|1|B|G|470

Current chains

Chain B

23S RRNA

Nearby chains

Chain LA

50S ribosomal protein L28