J5_5TCU_004

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*CGUGCCU*AUGAAC*GUG*CA

Length

21 nucleotides

Bulged bases

5TCU|1|B|A|577, 5TCU|1|B|U|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|B|U|576
5TCU|1|B|A|577
5TCU|1|B|G|578
*
5TCU|1|B|C|603
5TCU|1|B|G|604
5TCU|1|B|U|605
5TCU|1|B|G|606
5TCU|1|B|C|607
5TCU|1|B|C|608
5TCU|1|B|U|609
*
5TCU|1|B|A|618
5TCU|1|B|U|619
5TCU|1|B|G|620
5TCU|1|B|A|621
5TCU|1|B|A|622
5TCU|1|B|C|623
*
5TCU|1|B|G|1298
5TCU|1|B|U|1299
5TCU|1|B|G|1300
*
5TCU|1|B|C|2044
5TCU|1|B|A|2045

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain L4

50S ribosomal protein L21

Chain L5

50S ribosomal protein L22

Chain LE

50S ribosomal protein L32

Chain LO

50S ribosomal protein L15