J5_5TCU_007

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

5TCU|1|B|A|2089, 5TCU|1|B|A|2475, 5TCU|1|B|U|2612, 5TCU|1|B|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|B|G|2084
5TCU|1|B|A|2085
5TCU|1|B|A|2086
5TCU|1|B|A|2087
5TCU|1|B|G|2088
5TCU|1|B|A|2089
5TCU|1|B|C|2090
5TCU|1|B|C|2091
*
5TCU|1|B|G|2473
5TCU|1|B|G|2474
5TCU|1|B|A|2475
5TCU|1|B|U|2476
5TCU|1|B|A|2477
5TCU|1|B|A|2478
5TCU|1|B|C|2479
5TCU|1|B|A|2480
*
5TCU|1|B|U|2527
5TCU|1|B|C|2528
5TCU|1|B|G|2529
5TCU|1|B|A|2530
5TCU|1|B|U|2531
5TCU|1|B|G|2532
5TCU|1|B|U|2533
5TCU|1|B|C|2534
*
5TCU|1|B|G|2609
5TCU|1|B|G|2610
5TCU|1|B|U|2611
5TCU|1|B|U|2612
5TCU|1|B|C|2613
5TCU|1|B|A|2614
5TCU|1|B|G|2615
*
5TCU|1|B|C|2633
5TCU|1|B|G|2634
5TCU|1|B|G|2635
5TCU|1|B|U|2636
5TCU|1|B|C|2637
5TCU|1|B|C|2638

Current chains

Chain B

23S RRNA

Nearby chains

Chain E

Transfer RNA; tRNA

Chain L2

50S ribosomal protein L2

Chain L9

50S ribosomal protein L27

Chain LC

50S ribosomal protein L3

Chain LE

50S ribosomal protein L32

Chain LJ

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15

Chain LP

50S ribosomal protein L16