J5_5TZS_001
3D structure
- PDB id
- 5TZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Architecture of the yeast small subunit processome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5TZS|1|1|A|93, 5TZS|1|1|C|424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5TZS_001 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.4552
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5TZS|1|1|C|54
5TZS|1|1|A|55
5TZS|1|1|U|56
5TZS|1|1|G|57
*
5TZS|1|1|C|90
5TZS|1|1|G|91
5TZS|1|1|A|92
5TZS|1|1|A|93
5TZS|1|1|U|94
5TZS|1|1|G|95
5TZS|1|1|G|96
5TZS|1|1|C|97
*
5TZS|1|1|G|386
5TZS|1|1|A|387
5TZS|1|1|G|388
*
5TZS|1|1|C|409
5TZS|1|1|A|410
5TZS|1|1|C|411
*
5TZS|1|1|G|422
5TZS|1|1|G|423
5TZS|1|1|C|424
5TZS|1|1|A|425
5TZS|1|1|G|426
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain 5
- rpS4_ES4
- Chain 8
- rpS8_eS8
- Chain V
- Enp2
Coloring options: