3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GAAAGACC*GGAUAACAG*(OMC)CUCGA(PSU)GUC*GGUUUAG*CGGUCC
Length
40 nucleotides
Bulged bases
5U4I|1|A|A|2062, 5U4I|1|A|A|2448, 5U4I|1|A|U|2585, 5U4I|1|A|U|2609, 5U4I|1|A|C|2610
QA status
Modified nucleotides: OMC, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5U4I|1|A|G|2057
5U4I|1|A|A|2058
5U4I|1|A|A|2059
5U4I|1|A|A|2060
5U4I|1|A|G|2061
5U4I|1|A|A|2062
5U4I|1|A|C|2063
5U4I|1|A|C|2064
*
5U4I|1|A|G|2446
5U4I|1|A|G|2447
5U4I|1|A|A|2448
5U4I|1|A|U|2449
5U4I|1|A|A|2450
5U4I|1|A|A|2451
5U4I|1|A|C|2452
5U4I|1|A|A|2453
5U4I|1|A|G|2454
*
5U4I|1|A|OMC|2498
5U4I|1|A|C|2499
5U4I|1|A|U|2500
5U4I|1|A|C|2501
5U4I|1|A|G|2502
5U4I|1|A|A|2503
5U4I|1|A|PSU|2504
5U4I|1|A|G|2505
5U4I|1|A|U|2506
5U4I|1|A|C|2507
*
5U4I|1|A|G|2582
5U4I|1|A|G|2583
5U4I|1|A|U|2584
5U4I|1|A|U|2585
5U4I|1|A|U|2586
5U4I|1|A|A|2587
5U4I|1|A|G|2588
*
5U4I|1|A|C|2606
5U4I|1|A|G|2607
5U4I|1|A|G|2608
5U4I|1|A|U|2609
5U4I|1|A|C|2610
5U4I|1|A|C|2611

Current chains

Chain A
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain M
50S ribosomal protein L15
Chain N
50S ribosomal protein L16
Chain T
50S ribosomal protein L22
Chain v
Peptide chain release factor 2
Chain x
Transfer RNA; tRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1823 s