3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
5U9F|1|01|A|532, 5U9F|1|01|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5U9F_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0743
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

5U9F|1|01|C|531
5U9F|1|01|A|532
5U9F|1|01|G|533
*
5U9F|1|01|C|560
5U9F|1|01|G|561
5U9F|1|01|U|562
5U9F|1|01|A|563
5U9F|1|01|C|564
*
5U9F|1|01|G|577
5U9F|1|01|G|578
5U9F|1|01|G|579
*
5U9F|1|01|C|1261
5U9F|1|01|A|1262
*
5U9F|1|01|U|2017
5U9F|1|01|G|2018

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 06
50S ribosomal protein L4
Chain 19
50S ribosomal protein L20
Chain 20
50S ribosomal protein L21
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.0563 s
Application loaded.