J5_5UQ8_002

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5UQ8|1|A|U|273|||B, 5UQ8|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|C|268
5UQ8|1|A|U|269
5UQ8|1|A|A|270
5UQ8|1|A|A|271
5UQ8|1|A|A|272|||A
5UQ8|1|A|C|272|||B
*
5UQ8|1|A|G|272|||V
5UQ8|1|A|G|272|||W
5UQ8|1|A|G|272|||X
5UQ8|1|A|U|272|||Y
5UQ8|1|A|C|272|||Z
5UQ8|1|A|G|273|||A
5UQ8|1|A|U|273|||B
5UQ8|1|A|G|273|||C
*
5UQ8|1|A|C|366
5UQ8|1|A|G|370
5UQ8|1|A|A|371
5UQ8|1|A|G|372
5UQ8|1|A|U|373
5UQ8|1|A|A|374
5UQ8|1|A|C|375
*
5UQ8|1|A|G|399
5UQ8|1|A|G|400
5UQ8|1|A|A|401
5UQ8|1|A|A|402
5UQ8|1|A|U|403
5UQ8|1|A|C|404
5UQ8|1|A|U|405
5UQ8|1|A|G|406
*
5UQ8|1|A|U|421
5UQ8|1|A|A|422
5UQ8|1|A|A|423
5UQ8|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain I

50S ribosomal protein L9