J5_5UQ8_005

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|C|601
5UQ8|1|A|G|602
5UQ8|1|A|A|603
5UQ8|1|A|G|604
*
5UQ8|1|A|C|624
5UQ8|1|A|G|625
5UQ8|1|A|U|626
5UQ8|1|A|A|627
5UQ8|1|A|G|628
*
5UQ8|1|A|C|635
5UQ8|1|A|G|636
5UQ8|1|A|A|637
5UQ8|1|A|G|638
*
5UQ8|1|A|C|650
5UQ8|1|A|G|651
5UQ8|1|A|C|652|||A
5UQ8|1|A|A|652|||B
5UQ8|1|A|A|652|||C
5UQ8|1|A|G|652|||D
*
5UQ8|1|A|C|652|||W
5UQ8|1|A|A|653
5UQ8|1|A|A|654
5UQ8|1|A|A|655
5UQ8|1|A|G|656

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain F

50S ribosomal protein L4

Chain P

50S ribosomal protein L15