J5_5UYN_001

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5UYN|1|01|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5UYN_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1187

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5UYN|1|01|C|47
5UYN|1|01|G|48
5UYN|1|01|A|49
5UYN|1|01|U|50
5UYN|1|01|G|51
5UYN|1|01|A|52
5UYN|1|01|A|53
5UYN|1|01|G|54
*
5UYN|1|01|C|116
5UYN|1|01|G|117
5UYN|1|01|A|118
5UYN|1|01|A|119
5UYN|1|01|U|120
5UYN|1|01|G|121
*
5UYN|1|01|C|130
5UYN|1|01|A|131
*
5UYN|1|01|U|148
5UYN|1|01|A|149
5UYN|1|01|U|150
*
5UYN|1|01|A|176
5UYN|1|01|G|177
5UYN|1|01|G|178

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34