J5_5UZ4_003

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UZ4|1|A|C|36
5UZ4|1|A|U|37
5UZ4|1|A|G|38
5UZ4|1|A|G|39
*
5UZ4|1|A|C|403
5UZ4|1|A|G|404
5UZ4|1|A|U|405
5UZ4|1|A|G|406
*
5UZ4|1|A|C|436
5UZ4|1|A|U|437
5UZ4|1|A|U|438
5UZ4|1|A|U|439
5UZ4|1|A|C|440
*
5UZ4|1|A|G|497
5UZ4|1|A|A|498
5UZ4|1|A|A|499
5UZ4|1|A|G|500
*
5UZ4|1|A|C|545
5UZ4|1|A|A|546
5UZ4|1|A|A|547
5UZ4|1|A|G|548

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12