J5_5V7Q_004
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAGUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5V7Q|1|A|U|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5V7Q_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1634
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5V7Q|1|A|C|686
5V7Q|1|A|G|687
5V7Q|1|A|A|688
5V7Q|1|A|G|689
5V7Q|1|A|U|690
5V7Q|1|A|C|691
*
5V7Q|1|A|G|797
5V7Q|1|A|G|798
5V7Q|1|A|A|799
5V7Q|1|A|C|800
*
5V7Q|1|A|G|938
5V7Q|1|A|U|939
5V7Q|1|A|U|940
5V7Q|1|A|C|941
*
5V7Q|1|A|G|1327
5V7Q|1|A|C|1328
*
5V7Q|1|A|G|1381
5V7Q|1|A|A|1382
5V7Q|1|A|G|1383
5V7Q|1|A|A|1384
5V7Q|1|A|A|1385
5V7Q|1|A|U|1386
5V7Q|1|A|G|1387
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- LSU ribosomal protein L21p
Coloring options: