Loop J5_5V7Q

3D structure

PDB id: 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 5V7Q|1|A|A|2300, 5V7Q|1|A|A|2686, 5V7Q|1|A|U|2687, 5V7Q|1|A|G|2743, 5V7Q|1|A|U|2823, 5V7Q|1|A|U|2847, 5V7Q|1|A|C|2848
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5V7Q|1|A|A|2295
5V7Q|1|A|A|2296
5V7Q|1|A|A|2297
5V7Q|1|A|A|2298
5V7Q|1|A|G|2299
5V7Q|1|A|A|2300
5V7Q|1|A|C|2301
5V7Q|1|A|C|2302
*
5V7Q|1|A|G|2684
5V7Q|1|A|G|2685
5V7Q|1|A|A|2686
5V7Q|1|A|U|2687
5V7Q|1|A|A|2688
5V7Q|1|A|A|2689
5V7Q|1|A|C|2690
5V7Q|1|A|A|2691
*
5V7Q|1|A|U|2738
5V7Q|1|A|C|2739
5V7Q|1|A|G|2740
5V7Q|1|A|A|2741
5V7Q|1|A|U|2742
5V7Q|1|A|G|2743
5V7Q|1|A|U|2744
5V7Q|1|A|C|2745
*
5V7Q|1|A|G|2820
5V7Q|1|A|G|2821
5V7Q|1|A|U|2822
5V7Q|1|A|U|2823
5V7Q|1|A|U|2824
5V7Q|1|A|A|2825
5V7Q|1|A|G|2826
*
5V7Q|1|A|C|2844
5V7Q|1|A|G|2845
5V7Q|1|A|G|2846
5V7Q|1|A|U|2847
5V7Q|1|A|C|2848
5V7Q|1|A|U|2849

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain C: 50S ribosomal protein L2
Chain D: 50S ribosomal protein L3
Chain E: 50S ribosomal protein L4
Chain L: 50S ribosomal protein L15
Chain M: 50S ribosomal protein L16
Chain S: 50S ribosomal protein L22

J5_5V7Q_006