J5_5V7Q_008

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCCGCC*GGUAAG

Length

37 nucleotides

Bulged bases

5V7Q|1|A|U|319, 5V7Q|1|A|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V7Q|1|A|C|270
5V7Q|1|A|U|271
5V7Q|1|A|A|272
5V7Q|1|A|A|273
5V7Q|1|A|A|274
5V7Q|1|A|C|275
*
5V7Q|1|A|G|313
5V7Q|1|A|G|314
5V7Q|1|A|G|315
5V7Q|1|A|U|316
5V7Q|1|A|U|317
5V7Q|1|A|G|318
5V7Q|1|A|U|319
5V7Q|1|A|G|320
*
5V7Q|1|A|C|458
5V7Q|1|A|G|459
5V7Q|1|A|A|460
5V7Q|1|A|G|461
5V7Q|1|A|U|462
5V7Q|1|A|A|463
5V7Q|1|A|G|464
*
5V7Q|1|A|U|488
5V7Q|1|A|G|489
5V7Q|1|A|A|490
5V7Q|1|A|A|491
5V7Q|1|A|U|492
5V7Q|1|A|C|493
5V7Q|1|A|C|494
5V7Q|1|A|G|495
5V7Q|1|A|C|496
5V7Q|1|A|C|497
*
5V7Q|1|A|G|508
5V7Q|1|A|G|509
5V7Q|1|A|U|510
5V7Q|1|A|A|511
5V7Q|1|A|A|512
5V7Q|1|A|G|513

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28