J5_5V8I_017

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5V8I_017 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0739

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5V8I|1|2a|C|36
5V8I|1|2a|U|37
5V8I|1|2a|G|38
5V8I|1|2a|G|39
*
5V8I|1|2a|C|403
5V8I|1|2a|U|404
5V8I|1|2a|U|405
5V8I|1|2a|G|406
*
5V8I|1|2a|C|436
5V8I|1|2a|U|437
5V8I|1|2a|G|438
5V8I|1|2a|A|439
5V8I|1|2a|A|441
5V8I|1|2a|C|442
*
5V8I|1|2a|G|492
5V8I|1|2a|G|493
5V8I|1|2a|U|494
5V8I|1|2a|A|495
5V8I|1|2a|A|496
5V8I|1|2a|U|498
5V8I|1|2a|A|499
5V8I|1|2a|G|500
*
5V8I|1|2a|C|545
5V8I|1|2a|G|546
5V8I|1|2a|A|547
5V8I|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12