J5_5VP2_002
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5VP2|1|1A|U|288, 5VP2|1|1A|U|432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VP2|1|1A|C|257
5VP2|1|1A|U|258
5VP2|1|1A|A|259
5VP2|1|1A|A|260
5VP2|1|1A|A|261
5VP2|1|1A|C|262
*
5VP2|1|1A|G|282
5VP2|1|1A|G|283
5VP2|1|1A|G|284
5VP2|1|1A|U|285
5VP2|1|1A|C|286
5VP2|1|1A|G|287
5VP2|1|1A|U|288
5VP2|1|1A|G|289
*
5VP2|1|1A|C|396
5VP2|1|1A|G|397
5VP2|1|1A|A|398
5VP2|1|1A|G|399
5VP2|1|1A|U|400
5VP2|1|1A|A|401
5VP2|1|1A|C|402
*
5VP2|1|1A|G|426
5VP2|1|1A|G|427
5VP2|1|1A|A|428
5VP2|1|1A|A|429
5VP2|1|1A|U|430
5VP2|1|1A|C|431
5VP2|1|1A|U|432
5VP2|1|1A|G|433
*
5VP2|1|1A|U|448
5VP2|1|1A|A|449
5VP2|1|1A|A|450
5VP2|1|1A|G|451
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
Coloring options: