J5_5VP2_014

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5VP2|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|2A|C|601
5VP2|1|2A|G|602
5VP2|1|2A|A|603
5VP2|1|2A|G|604
*
5VP2|1|2A|C|624
5VP2|1|2A|G|625
5VP2|1|2A|U|626
5VP2|1|2A|A|627
5VP2|1|2A|G|628
*
5VP2|1|2A|C|635
5VP2|1|2A|G|636
5VP2|1|2A|A|637
5VP2|1|2A|G|638
*
5VP2|1|2A|C|650
5VP2|1|2A|G|651
5VP2|1|2A|C|652
5VP2|1|2A|A|652|||A
5VP2|1|2A|A|652|||B
5VP2|1|2A|G|652|||C
*
5VP2|1|2A|C|652|||V
5VP2|1|2A|A|653
5VP2|1|2A|A|654
5VP2|1|2A|A|655
5VP2|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15