J5_5VPO_001

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5VPO_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0725

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5VPO|1|QA|C|36
5VPO|1|QA|U|37
5VPO|1|QA|G|38
5VPO|1|QA|G|39
*
5VPO|1|QA|C|403
5VPO|1|QA|U|404
5VPO|1|QA|U|405
5VPO|1|QA|G|406
*
5VPO|1|QA|C|436
5VPO|1|QA|U|437
5VPO|1|QA|G|438
5VPO|1|QA|A|439
5VPO|1|QA|A|440
5VPO|1|QA|C|442
*
5VPO|1|QA|G|492
5VPO|1|QA|G|493
5VPO|1|QA|U|494
5VPO|1|QA|A|495
5VPO|1|QA|A|496
5VPO|1|QA|U|497
5VPO|1|QA|A|498
5VPO|1|QA|G|500
*
5VPO|1|QA|C|545
5VPO|1|QA|G|546
5VPO|1|QA|A|547
5VPO|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9