J5_5VPO_010
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5VPO|1|RA|U|2076, 5VPO|1|RA|G|2428, 5VPO|1|RA|G|2429, 5VPO|1|RA|A|2430, 5VPO|1|RA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5VPO_010 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0827
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5VPO|1|RA|U|2074
5VPO|1|RA|U|2075
5VPO|1|RA|U|2076
5VPO|1|RA|A|2077
*
5VPO|1|RA|U|2243
5VPO|1|RA|U|2244
5VPO|1|RA|U|2245
5VPO|1|RA|G|2246
*
5VPO|1|RA|C|2258
5VPO|1|RA|G|2259
*
5VPO|1|RA|C|2281
5VPO|1|RA|G|2282
*
5VPO|1|RA|C|2427
5VPO|1|RA|G|2428
5VPO|1|RA|G|2429
5VPO|1|RA|A|2430
5VPO|1|RA|U|2431
5VPO|1|RA|A|2432
5VPO|1|RA|A|2433
5VPO|1|RA|A|2434
5VPO|1|RA|A|2435
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain R1
- 50S ribosomal protein L28
- Chain R6
- 50S ribosomal protein L33
- Chain RD
- 50S ribosomal protein L2
- Chain RP
- 50S ribosomal protein L15
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