J5_5VPO_016
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5VPO|1|YA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5VPO_016 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0691
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5VPO|1|YA|C|584
5VPO|1|YA|G|585
5VPO|1|YA|A|586
5VPO|1|YA|C|587
5VPO|1|YA|U|588
5VPO|1|YA|C|589
*
5VPO|1|YA|G|668
5VPO|1|YA|G|669
5VPO|1|YA|A|670
5VPO|1|YA|C|671
*
5VPO|1|YA|G|809
5VPO|1|YA|U|810
5VPO|1|YA|U|811
5VPO|1|YA|C|812
*
5VPO|1|YA|G|1195
5VPO|1|YA|C|1196
*
5VPO|1|YA|G|1250
5VPO|1|YA|C|1251
5VPO|1|YA|G|1252
5VPO|1|YA|A|1253
5VPO|1|YA|A|1254
5VPO|1|YA|U|1255
5VPO|1|YA|G|1256
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y8
- 50S ribosomal protein L35
- Chain YF
- 50S ribosomal protein L4
- Chain YP
- 50S ribosomal protein L15
- Chain YU
- 50S ribosomal protein L20
- Chain YV
- 50S ribosomal protein L21
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